Index

A

adj() (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method) adj_weighted() (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method) AffineModel (class in l2gv2.align.geo.model) align_patches() (l2gv2.align.alignment.AlignmentProblem method) (l2gv2.align.AlignmentProblem method) (l2gv2.align.geo.geoalign.GeoAlignmentProblem method) (l2gv2.align.geo.GeoAlignmentProblem method) (l2gv2.align.GeoAlignmentProblem method) (l2gv2.patch.utils.AlignmentProblem method)

AlignmentProblem (class in l2gv2.align) (class in l2gv2.align.alignment) (class in l2gv2.patch.utils) AS733Dataset (class in l2gv2.datasets) (class in l2gv2.datasets.as733) as_array() (l2gv2.patch.lazy.LazyMeanAggregatorCoordinates method) (l2gv2.patch.LazyMeanAggregatorCoordinates method)

B

BaseDataset (class in l2gv2.datasets) (class in l2gv2.datasets.base) BaseLazyCoordinates (class in l2gv2.patch) (class in l2gv2.patch.lazy) bfs_order() (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method) (l2gv2.graphs.NPGraph method) (l2gv2.graphs.npgraph.NPGraph method) (l2gv2.graphs.TGraph method) (l2gv2.graphs.tgraph.TGraph method)

C

calc_synchronised_rotations() (l2gv2.patch.utils.AlignmentProblem method) (l2gv2.patch.utils.SVDAlignmentProblem method) calc_synchronised_scales() (l2gv2.patch.utils.AlignmentProblem method) calc_synchronised_translations() (l2gv2.patch.utils.AlignmentProblem method) class_type (l2gv2.graphs.JitGraph attribute) (l2gv2.graphs.npgraph.JitGraph attribute) (l2gv2.graphs.utils.UnionFind attribute) conductance() (in module l2gv2.graphs.utils) conductance_weighted_graph() (in module l2gv2.patch.sparsify) connected_component_ids() (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method) (l2gv2.graphs.NPGraph method) (l2gv2.graphs.npgraph.NPGraph method) (l2gv2.graphs.TGraph method) (l2gv2.graphs.tgraph.TGraph method)

coordinates (l2gv2.patch.Patch attribute) (l2gv2.patch.patches.Patch attribute) CoraDataset (class in l2gv2.datasets) (class in l2gv2.datasets.cora) create_overlapping_patches() (in module l2gv2.patch) (in module l2gv2.patch.patches) create_patch_data() (in module l2gv2.patch) (in module l2gv2.patch.patches) create_patch_graph() (in module l2gv2.patch.patches)

D

degree (l2gv2.graphs.Graph attribute) (l2gv2.graphs.graph.Graph attribute) (l2gv2.graphs.NPGraph attribute) (l2gv2.graphs.TGraph attribute) (l2gv2.graphs.tgraph.TGraph attribute) device (l2gv2.graphs.Graph attribute) (l2gv2.graphs.graph.Graph attribute) (l2gv2.graphs.TGraph property) (l2gv2.graphs.tgraph.TGraph property) DGraphDataset (class in l2gv2.datasets) (class in l2gv2.datasets.dgraph)

dim (l2gv2.align.alignment.AlignmentProblem attribute) (l2gv2.align.AlignmentProblem attribute) (l2gv2.patch.utils.AlignmentProblem attribute) DistanceDecoder (class in l2gv2.embedding.gae.layers) (class in l2gv2.embedding.gae.layers.decoders) download() (l2gv2.datasets.as733.AS733Dataset method) (l2gv2.datasets.AS733Dataset method) (l2gv2.datasets.dgraph.DGraphDataset method) (l2gv2.datasets.DGraphDataset method)

E

EarlyStopping (class in l2gv2.utils) edge_sampling_sparsify() (in module l2gv2.patch.sparsify) edges() (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method) (l2gv2.graphs.NPGraph method) (l2gv2.graphs.npgraph.NPGraph method) (l2gv2.graphs.TGraph method) (l2gv2.graphs.tgraph.TGraph method) edges_weighted() (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method) (l2gv2.graphs.NPGraph method) (l2gv2.graphs.npgraph.NPGraph method) (l2gv2.graphs.TGraph method) (l2gv2.graphs.tgraph.TGraph method)

effective_resistances() (in module l2gv2.patch.sparsify) embed() (l2gv2.embedding.gae.utils.mixins.EmbeddingMixin method) EmbeddingMixin (class in l2gv2.embedding.gae.utils.mixins) EmbeddingModel (class in l2gv2.embedding.embedding) ensure_extension() (in module l2gv2.patch.utils) (in module l2gv2.utils)

F

fennel_clustering() (in module l2gv2.patch.clustering) FilePatch (class in l2gv2.patch) (class in l2gv2.patch.patches) fit() (l2gv2.embedding.embedding.EmbeddingModel method) fit_transform() (l2gv2.embedding.embedding.EmbeddingModel method) flatten() (in module l2gv2.utils) forward() (l2gv2.align.geo.model.AffineModel method) (l2gv2.align.geo.model.OrthogonalModel method) (l2gv2.align.geo.OrthogonalModel method) (l2gv2.embedding.gae.GAEconv method) (l2gv2.embedding.gae.layers.decoders.DistanceDecoder method) (l2gv2.embedding.gae.layers.DistanceDecoder method) (l2gv2.embedding.gae.layers.GAEconv method) (l2gv2.embedding.gae.layers.GAEconv.GAEconv method) (l2gv2.embedding.gae.layers.VGAEconv method) (l2gv2.embedding.gae.layers.VGAEconv.VGAEconv method) (l2gv2.embedding.gae.VGAEconv method) (l2gv2.embedding.GAEconv method) (l2gv2.embedding.VGAEconv method)

forward_all() (l2gv2.embedding.gae.layers.decoders.DistanceDecoder method) (l2gv2.embedding.gae.layers.DistanceDecoder method) from_networkx() (l2gv2.graphs.Graph class method) (l2gv2.graphs.graph.Graph class method) from_tg() (l2gv2.graphs.Graph class method) (l2gv2.graphs.graph.Graph class method)

G

GAE (class in l2gv2.embedding) (class in l2gv2.embedding.gae) (class in l2gv2.embedding.gae.models) (class in l2gv2.embedding.gae.models.gae) GAE_loss() (in module l2gv2.embedding) (in module l2gv2.embedding.gae) (in module l2gv2.embedding.gae.utils.loss) GAEconv (class in l2gv2.embedding) (class in l2gv2.embedding.gae) (class in l2gv2.embedding.gae.layers) (class in l2gv2.embedding.gae.layers.GAEconv) GeoAlignmentProblem (class in l2gv2.align) (class in l2gv2.align.geo) (class in l2gv2.align.geo.geoalign) geodesic_expand_overlap() (in module l2gv2.patch.patches) get_aligned_embedding() (l2gv2.align.alignment.AlignmentProblem method) (l2gv2.align.AlignmentProblem method) (l2gv2.patch.utils.AlignmentProblem method) get_aligner() (in module l2gv2.align) (in module l2gv2.align.registry)

get_coordinate() (l2gv2.patch.MeanAggregatorPatch method) (l2gv2.patch.Patch method) (l2gv2.patch.patches.MeanAggregatorPatch method) (l2gv2.patch.patches.Patch method) get_coordinates() (l2gv2.patch.lazy.LazyMeanAggregatorCoordinates method) (l2gv2.patch.LazyMeanAggregatorCoordinates method) (l2gv2.patch.MeanAggregatorPatch method) (l2gv2.patch.Patch method) (l2gv2.patch.patches.MeanAggregatorPatch method) (l2gv2.patch.patches.Patch method) get_dataset() (in module l2gv2.datasets) (in module l2gv2.datasets.registry) get_device() (in module l2gv2.utils) get_embedding() (in module l2gv2.embedding) (in module l2gv2.embedding.utils) get_intersections() (in module l2gv2.align.utils) Graph (class in l2gv2.graphs) (class in l2gv2.graphs.graph)

H

has_node_labels() (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method)

hierarchical_aglomerative_clustering() (in module l2gv2.patch.clustering) hierarchical_clustering() (in module l2gv2.patch.clustering) hierarchical_sparsify() (in module l2gv2.patch.sparsify)

I

index (l2gv2.patch.Patch attribute) (l2gv2.patch.patches.Patch attribute) induced_subgraph() (in module l2gv2.graphs) (in module l2gv2.graphs.utils) is_edge() (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method) (l2gv2.graphs.NPGraph method) (l2gv2.graphs.npgraph.NPGraph method) (l2gv2.graphs.TGraph method) (l2gv2.graphs.tgraph.TGraph method)

J

JitGraph (class in l2gv2.graphs) (class in l2gv2.graphs.npgraph)

L

l2gv2 module l2gv2.align module l2gv2.align.alignment module l2gv2.align.geo module l2gv2.align.geo.geoalign module l2gv2.align.geo.model module l2gv2.align.geo.train module l2gv2.align.registry module l2gv2.align.utils module l2gv2.datasets module l2gv2.datasets.as733 module l2gv2.datasets.base module l2gv2.datasets.cora module l2gv2.datasets.dgraph module l2gv2.datasets.registry module l2gv2.datasets.utils module l2gv2.embedding module l2gv2.embedding.embedding module l2gv2.embedding.gae module l2gv2.embedding.gae.layers module l2gv2.embedding.gae.layers.decoders module l2gv2.embedding.gae.layers.GAEconv module l2gv2.embedding.gae.layers.VGAEconv module l2gv2.embedding.gae.models module l2gv2.embedding.gae.models.gae module l2gv2.embedding.gae.models.vgae module

l2gv2.embedding.gae.utils module l2gv2.embedding.gae.utils.loss module l2gv2.embedding.gae.utils.mixins module l2gv2.embedding.train module l2gv2.embedding.utils module l2gv2.graphs module l2gv2.graphs.graph module l2gv2.graphs.npgraph module l2gv2.graphs.tgraph module l2gv2.graphs.utils module l2gv2.patch module l2gv2.patch.clustering module l2gv2.patch.lazy module l2gv2.patch.patches module l2gv2.patch.sparsify module l2gv2.patch.utils module l2gv2.utils module LazyCoordinates (class in l2gv2.patch.lazy) LazyFileCoordinates (class in l2gv2.patch) (class in l2gv2.patch.lazy) LazyMeanAggregatorCoordinates (class in l2gv2.patch) (class in l2gv2.patch.lazy) lcc() (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method) list_available_datasets() (in module l2gv2.datasets) load() (l2gv2.align.alignment.AlignmentProblem class method) (l2gv2.align.AlignmentProblem class method) (l2gv2.graphs.NPGraph class method) (l2gv2.graphs.npgraph.NPGraph class method) (l2gv2.patch.utils.AlignmentProblem class method) local_error() (in module l2gv2.align) (in module l2gv2.align.alignment) (in module l2gv2.patch.utils) louvain_clustering() (in module l2gv2.patch.clustering) lr_grid_search() (in module l2gv2.embedding) (in module l2gv2.embedding.train)

M

mean_embedding() (l2gv2.align.alignment.AlignmentProblem method) (l2gv2.align.AlignmentProblem method) (l2gv2.patch.utils.AlignmentProblem method) MeanAggregatorPatch (class in l2gv2.patch) (class in l2gv2.patch.patches) median_embedding() (l2gv2.align.alignment.AlignmentProblem method) (l2gv2.align.AlignmentProblem method) (l2gv2.patch.utils.AlignmentProblem method) merge_small_clusters() (in module l2gv2.patch.patches) metis_clustering() (in module l2gv2.patch.clustering) module l2gv2 l2gv2.align l2gv2.align.alignment l2gv2.align.geo l2gv2.align.geo.geoalign l2gv2.align.geo.model l2gv2.align.geo.train l2gv2.align.registry l2gv2.align.utils l2gv2.datasets l2gv2.datasets.as733 l2gv2.datasets.base l2gv2.datasets.cora l2gv2.datasets.dgraph l2gv2.datasets.registry l2gv2.datasets.utils l2gv2.embedding l2gv2.embedding.embedding l2gv2.embedding.gae l2gv2.embedding.gae.layers l2gv2.embedding.gae.layers.decoders l2gv2.embedding.gae.layers.GAEconv l2gv2.embedding.gae.layers.VGAEconv l2gv2.embedding.gae.models l2gv2.embedding.gae.models.gae l2gv2.embedding.gae.models.vgae l2gv2.embedding.gae.utils l2gv2.embedding.gae.utils.loss l2gv2.embedding.gae.utils.mixins l2gv2.embedding.train l2gv2.embedding.utils l2gv2.graphs l2gv2.graphs.graph l2gv2.graphs.npgraph l2gv2.graphs.tgraph l2gv2.graphs.utils l2gv2.patch l2gv2.patch.clustering l2gv2.patch.lazy l2gv2.patch.patches l2gv2.patch.sparsify l2gv2.patch.utils l2gv2.utils

N

n_nodes (l2gv2.align.alignment.AlignmentProblem attribute) (l2gv2.align.AlignmentProblem attribute) (l2gv2.patch.utils.AlignmentProblem attribute) n_patches (l2gv2.align.alignment.AlignmentProblem attribute) (l2gv2.align.AlignmentProblem attribute) (l2gv2.patch.utils.AlignmentProblem attribute) nearest_neighbor_sparsify() (in module l2gv2.patch.sparsify) nearest_orthogonal() (in module l2gv2.patch.utils) neighbourhood() (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method) (l2gv2.graphs.NPGraph method) (l2gv2.graphs.npgraph.NPGraph method) (l2gv2.graphs.TGraph method) (l2gv2.graphs.tgraph.TGraph method) nodes (l2gv2.graphs.Graph property) (l2gv2.graphs.graph.Graph property)

nodes_in_lcc() (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method) (l2gv2.graphs.NPGraph method) (l2gv2.graphs.npgraph.NPGraph method) (l2gv2.graphs.TGraph method) (l2gv2.graphs.tgraph.TGraph method) NPGraph (class in l2gv2.graphs) (class in l2gv2.graphs.npgraph) num_edges (l2gv2.graphs.Graph property) (l2gv2.graphs.graph.Graph property) num_features (l2gv2.graphs.Graph property) (l2gv2.graphs.graph.Graph property) num_nodes (l2gv2.graphs.TGraph attribute) (l2gv2.graphs.tgraph.TGraph attribute)

O

orthogonal_MSE_error() (in module l2gv2.align) (in module l2gv2.align.alignment)

orthogonal_mse_error() (in module l2gv2.patch.utils) OrthogonalModel (class in l2gv2.align.geo) (class in l2gv2.align.geo.model)

P

Partition (class in l2gv2.patch.clustering) partition_graph() (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method) (l2gv2.graphs.NPGraph method) (l2gv2.graphs.npgraph.NPGraph method) (l2gv2.graphs.TGraph method) (l2gv2.graphs.tgraph.TGraph method) Patch (class in l2gv2.patch) (class in l2gv2.patch.patches) patch_embeddings() (in module l2gv2.embedding) (in module l2gv2.embedding.utils) patches (l2gv2.patch.MeanAggregatorPatch property) (l2gv2.patch.patches.MeanAggregatorPatch property) patchgraph_mse_loss() (in module l2gv2.align.geo) (in module l2gv2.align.geo.train)

polars_to_raphtory() (in module l2gv2.datasets.utils) polars_to_tg() (in module l2gv2.datasets.utils) process() (l2gv2.datasets.as733.AS733Dataset method) (l2gv2.datasets.AS733Dataset method) processed_dir (l2gv2.datasets.base.BaseDataset property) (l2gv2.datasets.BaseDataset property) processed_file_names (l2gv2.datasets.as733.AS733Dataset property) (l2gv2.datasets.AS733Dataset property) (l2gv2.datasets.base.BaseDataset property) (l2gv2.datasets.BaseDataset property) procrustes_error() (in module l2gv2.align) (in module l2gv2.align.alignment) (in module l2gv2.patch.utils)

R

random_gen() (in module l2gv2.patch.utils) raw_dir (l2gv2.datasets.base.BaseDataset property) (l2gv2.datasets.BaseDataset property) raw_file_names (l2gv2.datasets.as733.AS733Dataset property) (l2gv2.datasets.AS733Dataset property) (l2gv2.datasets.base.BaseDataset property) (l2gv2.datasets.BaseDataset property) raw_paths (l2gv2.datasets.dgraph.DGraphDataset property) (l2gv2.datasets.DGraphDataset property) register_aligner() (in module l2gv2.align) (in module l2gv2.align.registry) register_dataset() (in module l2gv2.datasets) (in module l2gv2.datasets.registry)

relative_orthogonal_transform() (in module l2gv2.patch.utils) relative_scale() (in module l2gv2.patch.utils) relaxed_spanning_tree() (in module l2gv2.patch.sparsify) resistance_sparsify() (in module l2gv2.patch.sparsify) resistance_weighted_graph() (in module l2gv2.patch.sparsify) rolling_window_graph() (in module l2gv2.patch.patches) rotate_patches() (l2gv2.align.alignment.AlignmentProblem method) (l2gv2.align.AlignmentProblem method) (l2gv2.patch.utils.AlignmentProblem method) rotations (l2gv2.align.alignment.AlignmentProblem attribute) (l2gv2.align.AlignmentProblem attribute) (l2gv2.patch.utils.AlignmentProblem attribute)

S

sample_negative_edges() (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method) (l2gv2.graphs.NPGraph method) (l2gv2.graphs.npgraph.NPGraph method) (l2gv2.graphs.TGraph method) (l2gv2.graphs.tgraph.TGraph method) sample_positive_edges() (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method) (l2gv2.graphs.NPGraph method) (l2gv2.graphs.npgraph.NPGraph method) (l2gv2.graphs.TGraph method) (l2gv2.graphs.tgraph.TGraph method) save() (l2gv2.graphs.NPGraph method) (l2gv2.graphs.npgraph.NPGraph method) save_embedding() (l2gv2.align.alignment.AlignmentProblem method) (l2gv2.align.AlignmentProblem method) (l2gv2.patch.utils.AlignmentProblem method) save_patches() (l2gv2.align.alignment.AlignmentProblem method) (l2gv2.align.AlignmentProblem method) (l2gv2.patch.utils.AlignmentProblem method) save_transform() (l2gv2.patch.lazy.LazyCoordinates method) scale_patches() (l2gv2.align.alignment.AlignmentProblem method) (l2gv2.align.AlignmentProblem method) (l2gv2.patch.utils.AlignmentProblem method) scales (l2gv2.align.alignment.AlignmentProblem attribute) (l2gv2.align.AlignmentProblem attribute) (l2gv2.patch.utils.AlignmentProblem attribute) seed() (in module l2gv2.patch.utils) set_device() (in module l2gv2.utils)

shape (l2gv2.patch.BaseLazyCoordinates property) (l2gv2.patch.lazy.BaseLazyCoordinates property) (l2gv2.patch.lazy.LazyCoordinates property) (l2gv2.patch.lazy.LazyFileCoordinates property) (l2gv2.patch.lazy.LazyMeanAggregatorCoordinates property) (l2gv2.patch.LazyFileCoordinates property) (l2gv2.patch.LazyMeanAggregatorCoordinates property) (l2gv2.patch.Patch property) (l2gv2.patch.patches.Patch property) shifts (l2gv2.align.alignment.AlignmentProblem attribute) (l2gv2.align.AlignmentProblem attribute) (l2gv2.patch.utils.AlignmentProblem attribute) slices (l2gv2.datasets.AS733Dataset attribute) spanning_tree() (in module l2gv2.graphs) (in module l2gv2.graphs.utils) spanning_tree_mask() (in module l2gv2.graphs) (in module l2gv2.graphs.utils) speye() (in module l2gv2.utils) spread_clustering() (in module l2gv2.patch.clustering) strength (l2gv2.graphs.NPGraph attribute) (l2gv2.graphs.npgraph.NPGraph attribute) (l2gv2.graphs.TGraph attribute) (l2gv2.graphs.tgraph.TGraph attribute) subgraph() (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method) (l2gv2.graphs.NPGraph method) (l2gv2.graphs.npgraph.NPGraph method) (l2gv2.graphs.TGraph method) (l2gv2.graphs.tgraph.TGraph method) SVDAlignmentProblem (class in l2gv2.patch.utils)

T

tg_to_polars() (in module l2gv2.datasets.utils) TGraph (class in l2gv2.graphs) (class in l2gv2.graphs.tgraph) Timer (class in l2gv2.utils) to() (l2gv2.datasets.base.BaseDataset method) (l2gv2.datasets.BaseDataset method) (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method) (l2gv2.graphs.TGraph method) (l2gv2.graphs.tgraph.TGraph method) to_device() (in module l2gv2.align.utils) to_networkx() (l2gv2.graphs.Graph method) (l2gv2.graphs.graph.Graph method) (l2gv2.graphs.TGraph method) (l2gv2.graphs.tgraph.TGraph method)

tqdm_close() (in module l2gv2.utils) train() (in module l2gv2.embedding) (in module l2gv2.embedding.train) train_alignment_model() (in module l2gv2.align.geo) (in module l2gv2.align.geo.train) transform() (l2gv2.embedding.embedding.EmbeddingModel method) transform_error() (in module l2gv2.align) (in module l2gv2.align.alignment) (in module l2gv2.patch.utils) translate_patches() (l2gv2.align.alignment.AlignmentProblem method) (l2gv2.align.AlignmentProblem method) (l2gv2.patch.utils.AlignmentProblem method)

U

UnionFind (class in l2gv2.graphs.utils)

url (l2gv2.datasets.as733.AS733Dataset attribute) (l2gv2.datasets.AS733Dataset attribute)

V

verbose (l2gv2.align.alignment.AlignmentProblem attribute) (l2gv2.align.AlignmentProblem attribute) (l2gv2.patch.utils.AlignmentProblem attribute) VGAE (class in l2gv2.embedding) (class in l2gv2.embedding.gae) (class in l2gv2.embedding.gae.models) (class in l2gv2.embedding.gae.models.vgae)

VGAE_loss() (in module l2gv2.embedding) (in module l2gv2.embedding.gae) (in module l2gv2.embedding.gae.utils.loss) VGAEconv (class in l2gv2.embedding) (class in l2gv2.embedding.gae) (class in l2gv2.embedding.gae.layers) (class in l2gv2.embedding.gae.layers.VGAEconv)

W

weight() (l2gv2.align.alignment.AlignmentProblem method) (l2gv2.align.alignment.WeightedAlignmentProblem method) (l2gv2.align.AlignmentProblem method) (l2gv2.patch.utils.AlignmentProblem method) (l2gv2.patch.utils.WeightedAlignmentProblem method) weighted (l2gv2.graphs.Graph property) (l2gv2.graphs.graph.Graph property)

WeightedAlignmentProblem (class in l2gv2.align.alignment) (class in l2gv2.patch.utils) weights (l2gv2.graphs.Graph attribute) (l2gv2.graphs.graph.Graph attribute) (l2gv2.graphs.NPGraph attribute) (l2gv2.graphs.TGraph attribute)